SLC25A40 protein (Apteryx owenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC25A40

Solute carrier family 25 member 40. (337 aa)

Predicted Functional Partners:

TXNL1

0.666

BBOX1

0.588

RUNDC3B

0.515

ISCA1

0.513

ENSAOWP00000001536

0.484

ABCB11

0.484

ENSAOWP00000004561

0.484

ENSAOWP00000004669

0.484

ENSAOWP00000021954

0.484

ENSAOWP00000022606

0.461

Your Current Organism:

Apteryx owenii

NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB11	ENSAOWP00000001536	ENSAOWP00000001561	ENSAOWP00000001536	ATP binding cassette subfamily B member 11.	annotation not available	0.888
ABCB11	ENSAOWP00000022606	ENSAOWP00000001561	ENSAOWP00000022606	ATP binding cassette subfamily B member 11.	annotation not available	0.479
ABCB11	SLC25A40	ENSAOWP00000001561	ENSAOWP00000004480	ATP binding cassette subfamily B member 11.	Solute carrier family 25 member 40.	0.484
BBOX1	SLC25A40	ENSAOWP00000008398	ENSAOWP00000004480	Gamma-butyrobetaine hydroxylase 1.	Solute carrier family 25 member 40.	0.588
ENSAOWP00000001536	ABCB11	ENSAOWP00000001536	ENSAOWP00000001561	annotation not available	ATP binding cassette subfamily B member 11.	0.888
ENSAOWP00000001536	ENSAOWP00000022606	ENSAOWP00000001536	ENSAOWP00000022606	annotation not available	annotation not available	0.479
ENSAOWP00000001536	SLC25A40	ENSAOWP00000001536	ENSAOWP00000004480	annotation not available	Solute carrier family 25 member 40.	0.484
ENSAOWP00000004561	ENSAOWP00000022606	ENSAOWP00000004561	ENSAOWP00000022606	annotation not available	annotation not available	0.479
ENSAOWP00000004561	SLC25A40	ENSAOWP00000004561	ENSAOWP00000004480	annotation not available	Solute carrier family 25 member 40.	0.484
ENSAOWP00000004669	ENSAOWP00000022606	ENSAOWP00000004669	ENSAOWP00000022606	annotation not available	annotation not available	0.479
ENSAOWP00000004669	SLC25A40	ENSAOWP00000004669	ENSAOWP00000004480	annotation not available	Solute carrier family 25 member 40.	0.484
ENSAOWP00000021954	ENSAOWP00000022606	ENSAOWP00000021954	ENSAOWP00000022606	annotation not available	annotation not available	0.479
ENSAOWP00000021954	SLC25A40	ENSAOWP00000021954	ENSAOWP00000004480	annotation not available	Solute carrier family 25 member 40.	0.484
ENSAOWP00000022606	ABCB11	ENSAOWP00000022606	ENSAOWP00000001561	annotation not available	ATP binding cassette subfamily B member 11.	0.479
ENSAOWP00000022606	ENSAOWP00000001536	ENSAOWP00000022606	ENSAOWP00000001536	annotation not available	annotation not available	0.479
ENSAOWP00000022606	ENSAOWP00000004561	ENSAOWP00000022606	ENSAOWP00000004561	annotation not available	annotation not available	0.479
ENSAOWP00000022606	ENSAOWP00000004669	ENSAOWP00000022606	ENSAOWP00000004669	annotation not available	annotation not available	0.479
ENSAOWP00000022606	ENSAOWP00000021954	ENSAOWP00000022606	ENSAOWP00000021954	annotation not available	annotation not available	0.479
ENSAOWP00000022606	ISCA1	ENSAOWP00000022606	ENSAOWP00000019593	annotation not available	Iron-sulfur cluster assembly 1.	0.500
ENSAOWP00000022606	SLC25A40	ENSAOWP00000022606	ENSAOWP00000004480	annotation not available	Solute carrier family 25 member 40.	0.461