STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC2HC1CZinc finger C2HC-type containing 1C. (513 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.981
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.977
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 0.965
ENSAOWP00000015076
annotation not available
    
 0.942
SF3B3
Splicing factor 3b subunit 3.
    
 0.941
SF3B2
Splicing factor 3b subunit 2.
   
 0.940
LSM10
LSM10, U7 small nuclear RNA associated.
    
 0.939
DDX46
DEAD-box helicase 46.
   
 0.937
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.929
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
    
 0.928
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.