STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGFBRAP1Transforming growth factor beta receptor associated protein 1. (862 aa)    
Predicted Functional Partners:
VPS11
VPS11 core subunit of CORVET and HOPS complexes.
   
 0.998
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.998
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.997
VPS41
VPS41 subunit of HOPS complex.
   
 0.996
ENSAOWP00000024724
annotation not available
   
 0.985
ENSAOWP00000011900
annotation not available
   
 0.983
VPS39
VPS39 subunit of HOPS complex.
    
 
0.980
ENSAOWP00000000695
annotation not available
   
 0.963
ENSAOWP00000000720
annotation not available
   
 0.963
ENSAOWP00000000335
annotation not available
    
 
 0.883
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.