STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCLRE1CDNA cross-link repair 1C. (725 aa)    
Predicted Functional Partners:
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.993
XRCC5
X-ray repair cross complementing 5.
    
 0.983
XRCC6
X-ray repair cross complementing 6.
   
 0.982
LIG4
DNA ligase 4.
   
 0.943
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.904
SYMPK
Symplekin.
   
 0.889
INTS4
Integrator complex subunit 4.
   
 0.877
FANCM
FA complementation group M.
  
 0.876
MSH2
mutS homolog 2.
  
 0.873
PCF11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.862
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.