ZNFX1 protein (Apteryx owenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZNFX1

Zinc finger NFX1-type containing 1. (1791 aa)

Predicted Functional Partners:

TENT4A

0.790

TENT4B

0.790

ADAR

0.619

NRDE2

0.598

AGO2

0.524

AGO4

0.524

ENSAOWP00000014230

0.524

ENSAOWP00000014233

0.524

AGO3

0.524

DICER1

0.517

Your Current Organism:

Apteryx owenii

NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAR	AGO2	ENSAOWP00000026447	ENSAOWP00000009500	Adenosine deaminase RNA specific.	Argonaute RISC catalytic component 2.	0.508
ADAR	DICER1	ENSAOWP00000026447	ENSAOWP00000020910	Adenosine deaminase RNA specific.	Dicer 1, ribonuclease III.	0.698
ADAR	ZNFX1	ENSAOWP00000026447	ENSAOWP00000007544	Adenosine deaminase RNA specific.	Zinc finger NFX1-type containing 1.	0.619
AGO2	ADAR	ENSAOWP00000009500	ENSAOWP00000026447	Argonaute RISC catalytic component 2.	Adenosine deaminase RNA specific.	0.508
AGO2	AGO3	ENSAOWP00000009500	ENSAOWP00000014242	Argonaute RISC catalytic component 2.	Argonaute RISC catalytic component 3.	0.846
AGO2	AGO4	ENSAOWP00000009500	ENSAOWP00000014224	Argonaute RISC catalytic component 2.	Argonaute RISC component 4.	0.846
AGO2	DICER1	ENSAOWP00000009500	ENSAOWP00000020910	Argonaute RISC catalytic component 2.	Dicer 1, ribonuclease III.	0.990
AGO2	ENSAOWP00000014230	ENSAOWP00000009500	ENSAOWP00000014230	Argonaute RISC catalytic component 2.	annotation not available	0.844
AGO2	ENSAOWP00000014233	ENSAOWP00000009500	ENSAOWP00000014233	Argonaute RISC catalytic component 2.	annotation not available	0.846
AGO2	ZNFX1	ENSAOWP00000009500	ENSAOWP00000007544	Argonaute RISC catalytic component 2.	Zinc finger NFX1-type containing 1.	0.524
AGO3	AGO2	ENSAOWP00000014242	ENSAOWP00000009500	Argonaute RISC catalytic component 3.	Argonaute RISC catalytic component 2.	0.846
AGO3	DICER1	ENSAOWP00000014242	ENSAOWP00000020910	Argonaute RISC catalytic component 3.	Dicer 1, ribonuclease III.	0.918
AGO3	ZNFX1	ENSAOWP00000014242	ENSAOWP00000007544	Argonaute RISC catalytic component 3.	Zinc finger NFX1-type containing 1.	0.524
AGO4	AGO2	ENSAOWP00000014224	ENSAOWP00000009500	Argonaute RISC component 4.	Argonaute RISC catalytic component 2.	0.846
AGO4	DICER1	ENSAOWP00000014224	ENSAOWP00000020910	Argonaute RISC component 4.	Dicer 1, ribonuclease III.	0.918
AGO4	ZNFX1	ENSAOWP00000014224	ENSAOWP00000007544	Argonaute RISC component 4.	Zinc finger NFX1-type containing 1.	0.524
DICER1	ADAR	ENSAOWP00000020910	ENSAOWP00000026447	Dicer 1, ribonuclease III.	Adenosine deaminase RNA specific.	0.698
DICER1	AGO2	ENSAOWP00000020910	ENSAOWP00000009500	Dicer 1, ribonuclease III.	Argonaute RISC catalytic component 2.	0.990
DICER1	AGO3	ENSAOWP00000020910	ENSAOWP00000014242	Dicer 1, ribonuclease III.	Argonaute RISC catalytic component 3.	0.918
DICER1	AGO4	ENSAOWP00000020910	ENSAOWP00000014224	Dicer 1, ribonuclease III.	Argonaute RISC component 4.	0.918