STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRCC6X-ray repair cross complementing 6. (588 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross complementing 5.
   
0.999
WRN
WRN RecQ like helicase.
   
 
 0.997
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.994
LIG4
DNA ligase 4.
   
 0.993
MRE11
MRE11 homolog, double strand break repair nuclease.
   
 0.986
DCLRE1C
DNA cross-link repair 1C.
   
 0.982
TP53BP1
Tumor protein p53 binding protein 1.
    
 0.976
ATM
ATM serine/threonine kinase.
    
 0.974
LIG3
DNA ligase 3.
   
 0.962
LIG1
DNA ligase 1.
   
 0.962
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.