STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDHR1Cadherin related family member 1. (862 aa)    
Predicted Functional Partners:
JUP
Junction plakoglobin.
    
 0.755
CTNNB1
Catenin beta 1.
    
 0.755
PCDH15
Protocadherin related 15.
   
0.682
ENSAOWP00000012538
annotation not available
   
 0.682
CTNND1
Catenin delta 1.
    
 0.617
ARVCF
ARVCF delta catenin family member.
    
 0.617
PKP4
Plakophilin 4.
    
 0.617
ENSAOWP00000023616
annotation not available
    
 0.617
FAT2
FAT atypical cadherin 2.
   
0.603
FAT1
FAT atypical cadherin 1.
   
0.603
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.