STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC5Histone deacetylase 5. (983 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interaction domain 4A.
    
 0.949
ARID4B
AT-rich interaction domain 4B.
    
 0.949
MACROH2A1
macroH2A.1 histone.
    
 0.866
MACROH2A2
macroH2A.2 histone.
    
 0.866
KDM2A
Lysine demethylase 2A.
    
 0.839
KDM2B
Lysine demethylase 2B.
    
 0.839
PHF12
PHD finger protein 12.
   
 0.780
SIN3B
SIN3 transcription regulator family member B.
    
 0.777
SIN3A
SIN3 transcription regulator family member A.
    
 0.777
RANBP2
RAN binding protein 2.
  
 0.749
Your Current Organism:
Apteryx owenii
NCBI taxonomy Id: 8824
Other names: A. owenii, little spotted kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.