Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_0016KEGG: glo:Glov_3392 transferase, putative. (263 aa)    
Predicted Functional Partners:
DvMF_0014
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding.
 
    0.952
DvMF_0015
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26.
 
   
 0.872
DvMF_0017
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein.
 
    0.665
DvMF_0018
PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase.
 
   
 0.664
DvMF_1840
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
  
  
 0.611
DvMF_1619
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
    0.578
DvMF_2524
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
    0.578
DvMF_1620
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.
  
    0.540
DvMF_2525
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.
  
    0.540
DvMF_0019
Hypothetical protein.
       0.483
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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