STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0018PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase. (195 aa)    
Predicted Functional Partners:
DvMF_0181
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin).
 
 0.991
DvMF_0074
KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase.
 
 
 0.962
DvMF_2477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3696 ABC transporter related.
  
  
 0.921
DvMF_2767
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
 
  
 0.885
DvMF_0017
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein.
 
  
 0.837
DvMF_2658
TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_3080 cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.767
DvMF_0014
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding.
 
   
 0.742
DvMF_0016
KEGG: glo:Glov_3392 transferase, putative.
 
   
 0.671
DvMF_0298
TIGRFAM: siroheme synthase; KEGG: dde:Dde_2023 precorrin-2 dehydrogenase.
  
  
 0.667
DvMF_0015
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26.
     
 0.650
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.