Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0024PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein. (439 aa)    
Predicted Functional Partners:
DvMF_0789
Non-specific serine/threonine protein kinase; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases.
   
 0.943
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.933
DvMF_0566
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.916
DvMF_2078
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.916
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
   
 0.898
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
   
 0.898
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
   
 0.898
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
    
 0.857
DvMF_0836
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein.
 
   0.847
DvMF_0627
PFAM: Sel1 domain protein repeat-containing protein; KEGG: dde:Dde_0220 Sel1 repeat-containing protein.
   
  0.818
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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