Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0040PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 hypothetical protein. (327 aa)    
Predicted Functional Partners:
DvMF_0039
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related.
 
 0.997
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
 
 0.996
DvMF_0855
PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 0.976
DvMF_0852
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein.
  
 0.969
DvMF_1505
PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140.
  
 0.969
DvMF_1504
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pla:Plav_2513 ABC transporter related.
  
 0.968
DvMF_0853
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2298 ATPase.
  
 0.966
DvMF_0854
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein.
  
  
  0.919
DvMF_1503
PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein.
     
  0.900
DvMF_0041
PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 putative lipoprotein.
 
   
 0.888
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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