STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0041PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 putative lipoprotein. (197 aa)    
Predicted Functional Partners:
DvMF_0040
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 hypothetical protein.
 
   
 0.887
DvMF_0037
Conserved protein; KEGG: sat:SYN_02957 hypothetical membrane protein.
 
     0.735
DvMF_0039
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2415 ABC transporter related.
 
     0.717
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
 
     0.619
DvMF_0042
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein.
       0.543
DvMF_0606
KEGG: dde:Dde_1636 hypothetical protein.
  
     0.438
DvMF_0855
PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
  
     0.434
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.