Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0051PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein. (264 aa)    
Predicted Functional Partners:
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
 0.775
DvMF_0350
PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein.
  
     0.767
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.764
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.754
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
     
 0.753
DvMF_0301
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein.
  
     0.751
DvMF_0376
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative.
  
  
  0.647
DvMF_2786
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2765 amino acid ABC transporter permease.
  
 0.640
DvMF_3154
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease.
  
 0.640
DvMF_1415
KEGG: paa:Paes_0502 hypothetical protein.
  
  
  0.612
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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