Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0070PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative. (335 aa)    
Predicted Functional Partners:
DvMF_0066
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative.
 
 
 0.997
DvMF_0067
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative.
 
 
 0.997
DvMF_0069
KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative.
 
 0.997
DvMF_0068
KEGG: dde:Dde_2273 cytochrome c family protein.
 
 
 0.996
DvMF_0165
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin, iron-sulfur binding.
  
 0.996
DvMF_1553
KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.987
DvMF_1554
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.987
DvMF_0320
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_1076 thiosulfate reductase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.967
DvMF_0166
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.961
DvMF_2672
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein.
  
 
 0.961
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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