STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0070PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative. (335 aa)    
Predicted Functional Partners:
DvMF_0165
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin, iron-sulfur binding.
  
 
 0.973
DvMF_0069
KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative.
 
 
 0.967
DvMF_0066
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative.
 
  
 0.960
DvMF_0068
KEGG: dde:Dde_2273 cytochrome c family protein.
 
  
 0.955
DvMF_0071
KEGG: dde:Dde_2270 hypothetical protein.
 
   
 0.949
DvMF_0067
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative.
 
  
 0.931
DvMF_1491
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
     
 0.910
DvMF_2386
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
     
 0.910
DvMF_0766
PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase.
    
  0.905
DvMF_1490
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
     
 0.904
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.