STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0071KEGG: dde:Dde_2270 hypothetical protein. (181 aa)    
Predicted Functional Partners:
DvMF_0070
PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative.
 
   
 0.949
DvMF_0068
KEGG: dde:Dde_2273 cytochrome c family protein.
 
     0.947
DvMF_0069
KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit, putative.
 
     0.946
DvMF_0066
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative.
 
     0.945
DvMF_0067
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit, putative.
 
     0.896
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
  
     0.734
DvMF_1553
KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
     0.678
DvMF_1554
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
     0.671
DvMF_2120
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin serves as a carrier for pyruvate dehydrogenase.
 
     0.646
DvMF_1196
TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit.
 
   
 0.547
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.