Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0113KEGG: dde:Dde_2213 hypothetical protein. (191 aa)    
Predicted Functional Partners:
DvMF_0115
KEGG: dde:Dde_2212 hypothetical protein.
 
     0.937
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
 
     0.755
DvMF_0114
Hypothetical protein.
       0.736
DvMF_2851
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 
 0.627
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.608
DvMF_1325
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.
  
     0.596
DvMF_1393
TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein.
  
     0.590
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
  
     0.588
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.582
DvMF_2636
KEGG: dde:Dde_3117 hypothetical protein.
  
     0.581
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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