STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0115KEGG: dde:Dde_2212 hypothetical protein. (313 aa)    
Predicted Functional Partners:
DvMF_0113
KEGG: dde:Dde_2213 hypothetical protein.
 
     0.929
DvMF_0114
Hypothetical protein.
       0.750
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
 
     0.729
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.641
DvMF_0241
PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein.
  
     0.563
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
  
     0.548
DvMF_0248
PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein.
  
     0.537
DvMF_2851
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
   
 0.536
DvMF_2636
KEGG: dde:Dde_3117 hypothetical protein.
  
     0.518
DvMF_2519
TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dde:Dde_3157 FlgA family protein.
  
     0.501
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.