Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0116Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Belongs to the Fur family. (142 aa)    
Predicted Functional Partners:
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
 
  
 0.750
DvMF_0118
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase.
  
  
 0.715
DvMF_0119
PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.660
DvMF_0219
Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_486 alkyl hydroperoxide reductase.
  
  
 0.622
DvMF_2088
KEGG: dde:Dde_0885 hypothetical protein.
  
    0.587
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.566
DvMF_3040
KEGG: dde:Dde_1304 coenzyme A binding protein.
  
    0.558
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
  
    0.553
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.538
DvMF_0477
Putative RNA polymerase, sigma 70 family subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.501
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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