STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0117PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein. (276 aa)    
Predicted Functional Partners:
DvMF_0118
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase.
 
 0.999
DvMF_0119
PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.998
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 
 0.932
DvMF_0116
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Belongs to the Fur family.
 
  
 0.715
DvMF_0379
PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein.
  
  
 0.710
DvMF_0715
KEGG: pol:Bpro_3754 hypothetical protein.
  
  
 0.625
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
 0.564
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
    
 0.467
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
     
 0.458
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
  
 0.450
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.