Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0117PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein. (276 aa)    
Predicted Functional Partners:
DvMF_0118
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase.
 
 0.999
DvMF_0119
PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
 0.993
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
 0.882
DvMF_1044
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein.
  
  
 0.878
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
     
 0.861
DvMF_3137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0756 ABC transporter, ATP-binding protein.
     
 0.861
DvMF_0375
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative.
     
 0.860
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
    
 0.859
DvMF_1043
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein.
    
 0.849
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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