STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0119PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family. (344 aa)    
Predicted Functional Partners:
DvMF_0118
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2209 ATPase.
 
 
 0.999
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
 
 
 0.998
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
  
 0.816
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.709
rpmB
PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.701
DvMF_0116
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.612
DvMF_0715
KEGG: pol:Bpro_3754 hypothetical protein.
  
  
 0.607
DvMF_0379
PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein.
  
  
 0.535
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.462
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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