Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_0133PFAM: Methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein. (245 aa)    
Predicted Functional Partners:
DvMF_1042
KEGG: trq:TRQ2_0171 hypothetical protein.
  
 0.631
DvMF_1839
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_0616 methyltransferase type 12.
   
 0.603
DvMF_0132
SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2193 HD domain-containing protein.
 
     0.598
DvMF_0256
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase.
    
 0.597
DvMF_2357
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase.
    
 0.597
DvMF_1005
KEGG: dde:Dde_2659 acyl carrier protein, putative.
     
 0.594
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.594
DvMF_0131
KEGG: dde:Dde_2194 hypothetical protein.
       0.533
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.513
DvMF_0125
PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.481
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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