STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0152KEGG: dde:Dde_2169 hypothetical protein. (76 aa)    
Predicted Functional Partners:
DvMF_0153
KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein.
       0.798
DvMF_0154
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_2167 acetolactate synthase 3 regulatory subunit.
       0.782
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.753
DvMF_0150
PFAM: DivIVA family protein; KEGG: dde:Dde_2171 cell-division initiation protein DivIVA.
 
     0.751
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.747
DvMF_2563
PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein.
  
     0.731
DvMF_0151
PFAM: protein of unknown function DUF167; KEGG: dde:Dde_2170 hypothetical protein; Belongs to the UPF0235 family.
       0.720
DvMF_0149
PFAM: protein of unknown function YGGT; KEGG: lip:LI0363 predicted integral membrane protein.
       0.712
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
  
     0.705
DvMF_0549
KEGG: dde:Dde_1811 hypothetical protein.
  
     0.695
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.