STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0158KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family. (106 aa)    
Predicted Functional Partners:
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 
 0.982
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.718
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
  
 0.715
DvMF_0915
PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein.
  
 
 0.640
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
  
 
 
 0.628
DvMF_0335
KEGG: dde:Dde_2003 hypothetical protein.
  
     0.623
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
  
   
 0.623
DvMF_0914
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase.
  
 
 0.600
DvMF_2550
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase.
  
   
 0.591
DvMF_0997
PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein.
  
 
 0.587
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.