STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0164KEGG: mms:mma_3662 hypothetical protein. (273 aa)    
Predicted Functional Partners:
DvMF_0166
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.850
DvMF_0933
KEGG: sea:SeAg_B0652 molybdopterin-containing oxidoreductase membrane anchor subunit.
  
     0.686
DvMF_2468
KEGG: spt:SPA2121 molybdopterin-containing oxidoreductase membrane anchor subunit.
  
     0.662
DvMF_0929
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664 putative response regulator protein.
  
     0.583
DvMF_0165
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin, iron-sulfur binding.
       0.568
DvMF_0043
KEGG: dde:Dde_2536 hypothetical protein.
  
     0.555
DvMF_0931
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.521
DvMF_2766
KEGG: cbf:CLI_1113 hypothetical protein.
  
     0.466
DvMF_2166
PFAM: protein of unknown function DUF169; KEGG: glo:Glov_1444 protein of unknown function DUF169.
  
     0.443
DvMF_2632
KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
  
     0.443
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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