Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0178PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1787 putative lipoprotein. (169 aa)    
Predicted Functional Partners:
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
    0.779
rpmJ
PFAM: ribosomal protein L36; KEGG: dde:Dde_2235 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.754
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.748
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.743
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.735
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
 
     0.734
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.713
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
 
   
 0.711
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
    0.698
DvMF_0764
PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD.
  
     0.684
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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