Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0179Hypothetical protein; KEGG: oan:Oant_2848 extracellular solute-binding protein family 3. (283 aa)    
Predicted Functional Partners:
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
    
 0.775
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
     
 0.753
DvMF_0656
PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.
  
 
 0.606
DvMF_2477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3696 ABC transporter related.
   
 
 0.587
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.586
DvMF_0657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.
     
 0.584
DvMF_1568
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease.
 
 0.578
DvMF_1044
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein.
   
 
 0.574
DvMF_1043
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein.
     
 0.573
DvMF_2110
KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
 0.573
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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