STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0179Hypothetical protein; KEGG: oan:Oant_2848 extracellular solute-binding protein family 3. (283 aa)    
Predicted Functional Partners:
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.586
DvMF_3146
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423 putative polar amino acid transport system substrate-binding proetin.
  
     0.557
DvMF_1185
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.540
DvMF_0180
KEGG: ppw:PputW619_4145 hypothetical protein.
 
    
0.518
DvMF_1179
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.480
DvMF_0238
KEGG: dol:Dole_0216 hypothetical protein.
  
     0.460
DvMF_0051
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein.
  
     0.448
DvMF_1148
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein.
  
     0.440
DvMF_2191
KEGG: dde:Dde_0600 hypothetical protein.
  
     0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.