Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0181PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin). (242 aa)    
Predicted Functional Partners:
DvMF_0018
PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase.
 
 0.998
cysQ
Inositol monophosphatase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
  
 
 0.946
DvMF_2477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3696 ABC transporter related.
  
  
 0.932
DvMF_1710
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
    
 0.916
DvMF_2767
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
 
  
 0.916
DvMF_2893
TIGRFAM: adenylylsulfate reductase, alpha subunit; KEGG: dde:Dde_1110 adenylylsulfate reductase.
    
 0.916
DvMF_2892
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta.
    
 0.910
DvMF_1709
KEGG: dau:Daud_0789 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
    
  0.907
DvMF_1553
KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
  
 
 0.902
DvMF_1554
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
  
 
 0.902
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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