Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0209PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein. (322 aa)    
Predicted Functional Partners:
DvMF_2801
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase.
 
 0.944
DvMF_2927
KEGG: eca:ECA3573 tartronate semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding.
 
  
 0.938
DvMF_2875
PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_1087 glycolate oxidase, subunit GlcD, putative.
 
 
 0.930
DvMF_1862
PFAM: FAD linked oxidase domain protein; KEGG: dde:Dde_3239 glycolate oxidase, subunit GlcD.
   
 0.921
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.919
DvMF_2929
KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
  
 
 0.909
DvMF_1983
Phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase, putative.
    
 0.908
DvMF_1863
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein.
    
 0.906
DvMF_2874
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit, putative.
    
 0.906
DvMF_3003
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: rci:RRC4 putative aminotransferase.
  
 
  0.906
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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