STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0210PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr6548 leucine/isoleucine/valine-binding protein precursor. (592 aa)    
Predicted Functional Partners:
DvMF_0211
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.777
DvMF_1582
PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transport system, permeasecomponent.
 
 
 0.672
DvMF_1482
PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.668
DvMF_1483
PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.643
DvMF_1581
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.635
DvMF_2609
PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein.
 
 
 0.634
DvMF_2752
PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.627
DvMF_1164
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.617
DvMF_2608
PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.586
DvMF_2751
PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.585
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.