STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0212KEGG: dde:Dde_1682 hypothetical protein. (1217 aa)    
Predicted Functional Partners:
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.714
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.703
DvMF_2676
Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein, putative.
  
     0.617
DvMF_0479
KEGG: dde:Dde_2118 hypothetical protein.
  
     0.614
DvMF_0765
KEGG: dde:Dde_1587 hypothetical protein.
 
     0.604
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.604
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.571
DvMF_0211
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
     
 0.566
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.565
DvMF_0858
KEGG: dde:Dde_2304 hypothetical protein.
  
     0.548
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.