Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0235PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pst:PSPTO_3452 amino acid transporter LysE. (216 aa)    
Predicted Functional Partners:
DvMF_1489
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cvi:CV_0188 homoserine/homoserine lactone efflux protein.
  
     0.536
DvMF_2241
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter.
 
    0.498
DvMF_2771
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_2833 hypothetical protein.
 
   
 0.497
DvMF_0236
PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; Belongs to the peptidase M16 family.
   
   0.473
DvMF_2151
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A2130 lysine exporter protein (LysE/YggA).
  
     0.434
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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