STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0241PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein. (405 aa)    
Predicted Functional Partners:
DvMF_1490
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
  
  
  0.917
DvMF_2385
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: lip:LI1002 chain A, cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
  
  
  0.917
DvMF_1491
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
  
  
  0.911
DvMF_0766
PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase.
  
 
  0.903
DvMF_0070
PFAM: Nitrate reductase gamma subunit; KEGG: dde:Dde_2271 nitrate reductase, gamma subunit, putative.
    
  0.901
DvMF_2386
KEGG: lip:LI1001 cytochrome c nitrite reductase small subunit.
     
  0.900
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
 
     0.655
DvMF_1586
PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein.
  
  
 0.650
DvMF_2261
KEGG: rpa:RPA1389 hypothetical protein.
  
  
 0.650
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
  
     0.612
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.