Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0241PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein. (405 aa)    
Predicted Functional Partners:
DvMF_1586
PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein.
  
  
 0.663
DvMF_2261
KEGG: rpa:RPA1389 hypothetical protein.
  
  
 0.663
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
 
     0.658
DvMF_1749
PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase.
   
 
 0.614
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
  
   
 0.612
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
   
 0.566
DvMF_0115
KEGG: dde:Dde_2212 hypothetical protein.
  
     0.563
DvMF_0161
KEGG: lip:LI0306 predicted integral membrane protein.
     
 0.561
DvMF_0242
PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein.
       0.553
DvMF_0113
KEGG: dde:Dde_2213 hypothetical protein.
  
     0.552
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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