Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0250KEGG: dde:Dde_1715 CgeB family protein. (649 aa)    
Predicted Functional Partners:
DvMF_0249
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein.
 
   0.933
DvMF_0299
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein.
 
   0.809
DvMF_1547
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein.
 
   0.799
DvMF_2229
KEGG: dde:Dde_0075 hypothetical protein.
 
    0.797
DvMF_1546
KEGG: dde:Dde_0564 hypothetical protein.
 
     0.786
DvMF_0248
PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein.
 
    0.775
DvMF_0508
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein.
 
    0.773
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
 
     0.773
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
  
     0.773
DvMF_1136
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
  
     0.772
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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