Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0251PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein. (381 aa)    
Predicted Functional Partners:
DvMF_0249
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein.
  
    0.750
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
     0.722
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.696
DvMF_0252
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
 
     0.642
DvMF_2013
KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF, putative.
 
   
 0.630
DvMF_3035
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein.
  
    0.617
DvMF_0255
PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dde:Dde_1724 D-tyrosyl-tRNA deacylase.
       0.593
DvMF_0248
PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein.
 
     0.574
DvMF_1393
TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein.
 
     0.555
DvMF_0299
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein.
 
    0.552
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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