STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0251PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein. (381 aa)    
Predicted Functional Partners:
DvMF_0249
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein.
  
    0.704
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.695
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
     0.686
DvMF_0252
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
 
     0.641
DvMF_2013
KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF, putative.
 
   
 0.627
DvMF_3035
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein.
  
    0.595
DvMF_0248
PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein.
 
   
 0.587
DvMF_0255
PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dde:Dde_1724 D-tyrosyl-tRNA deacylase.
       0.566
DvMF_2585
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM.
 
    0.557
DvMF_1393
TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein.
 
     0.552
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.