Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0252Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family. (114 aa)    
Predicted Functional Partners:
DvMF_0253
Putative signal transduction histidine kinase; KEGG: dde:Dde_1722 putative anti-sigma regulatory factor (serine/threonine protein kinase).
 
 
 0.970
DvMF_0254
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase.
 
 
 0.960
DvMF_2441
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: lip:LI1168 sigma regulatory factor-histidine kinase.
  
 
 0.850
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
  
 0.825
DvMF_0852
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein.
  
 0.825
DvMF_1505
PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140.
  
 0.825
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
     
  0.825
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
  
  
 0.812
DvMF_1096
Multi-sensor hybrid histidine kinase; KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.803
DvMF_0255
PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dde:Dde_1724 D-tyrosyl-tRNA deacylase.
       0.794
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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