Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cpoBTol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (333 aa)    
Predicted Functional Partners:
DvMF_2360
TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system.
 
  
 0.899
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.703
DvMF_0262
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein.
       0.696
DvMF_3022
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein.
 
   0.658
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.644
DvMF_0349
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
  
 0.643
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
     0.640
DvMF_0264
KEGG: sfu:Sfum_0159 hypothetical protein.
       0.610
DvMF_0287
SurA domain protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase.
 
 
 0.609
DvMF_2364
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein.
 
  
 0.547
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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