Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0267PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase. (215 aa)    
Predicted Functional Partners:
DvMF_2222
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein.
 
 
   0.894
DvMF_2221
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0412 ATPase.
 
     0.726
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
  
 
 0.591
DvMF_0268
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF.
       0.509
DvMF_0783
Glucose/sorbosone dehydrogenase-like protein; KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase, putative.
  
     0.488
DvMF_2759
PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family.
   
 
 0.457
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.405
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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