STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0267PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase. (215 aa)    
Predicted Functional Partners:
DvMF_2222
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein.
 
     0.792
DvMF_2221
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0412 ATPase.
 
     0.720
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
  
 
 0.613
DvMF_0268
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF.
       0.509
DvMF_2759
PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family.
   
 
 0.507
DvMF_0783
Glucose/sorbosone dehydrogenase-like protein; KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase, putative.
  
     0.488
DvMF_0693
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
   
   0.444
DvMF_0694
PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein.
   
   0.444
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
   
   0.444
DvMF_1495
PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.
   
   0.444
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.