Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_0284PFAM: CheW domain protein; KEGG: dde:Dde_2040 CheW protein. (158 aa)    
Predicted Functional Partners:
DvMF_0467
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 CheA signal transduction histidine kinase.
 
 0.995
DvMF_0619
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 CheA signal transduction histidine kinase.
 
 0.995
DvMF_0774
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 CheA signal transduction histidine kinase.
 
 0.995
DvMF_1214
PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer.
 
 0.972
DvMF_2182
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.
 
 0.972
DvMF_2542
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2159 methyl-accepting chemotaxis sensory transducer.
 
 0.972
DvMF_0585
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein.
 
 0.971
DvMF_0621
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer.
 
 0.971
DvMF_0793
PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.
 
 0.971
DvMF_0948
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein.
 
 0.971
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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