STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0301PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein. (288 aa)    
Predicted Functional Partners:
DvMF_0051
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein.
  
     0.751
DvMF_0350
PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein.
  
     0.750
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.748
DvMF_1185
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.748
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.739
DvMF_1101
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein.
  
     0.689
DvMF_0053
KEGG: hch:HCH_03353 hypothetical protein.
  
     0.610
DvMF_2668
PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein.
  
   
 0.564
DvMF_0388
KEGG: gsu:GSU1295 hypothetical protein.
  
     0.539
DvMF_0302
PFAM: domain of unknown function DUF1737; KEGG: mes:Meso_3267 hypothetical protein.
       0.507
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.