STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0302PFAM: domain of unknown function DUF1737; KEGG: mes:Meso_3267 hypothetical protein. (68 aa)    
Predicted Functional Partners:
DvMF_0301
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein.
       0.507
DvMF_2600
PFAM: beta-lactamase domain protein; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein.
  
     0.492
DvMF_2321
KEGG: rpa:RPA2489 hypothetical protein.
  
     0.485
DvMF_1656
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease, HK97 family.
  
     0.444
DvMF_1133
KEGG: dde:Dde_2062 hypothetical protein.
  
     0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.