STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0304PFAM: Cache type 2 domain protein; KEGG: lch:Lcho_2364 cache type 2 domain protein. (152 aa)    
Predicted Functional Partners:
DvMF_0538
Cytochrome c class I; Natural electron acceptor for a formate dehydrogenase.
     
  0.900
DvMF_0539
PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553.
     
  0.900
DvMF_0303
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.
      0.572
DvMF_3106
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2424 hypothetical protein.
  
   
 0.446
DvMF_0305
KEGG: dde:Dde_3211 split soret cytochrome c precursor.
       0.416
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.