STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0317Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: cau:Caur_2724 protein of unknown function DUF294 nucleotidyltransferase putative. (730 aa)    
Predicted Functional Partners:
DvMF_0318
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III.
 
     0.948
DvMF_0315
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: afw:Anae109_3836 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.941
DvMF_0314
PFAM: protein of unknown function DUF485; KEGG: afw:Anae109_3835 protein of unknown function DUF485.
 
  
 0.918
DvMF_0316
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: aae:aq_2107 hypothetical protein.
 
    
0.803
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.556
DvMF_0431
TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC.
  
  
 0.402
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.