STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0329KEGG: dde:Dde_3531 hypothetical protein. (295 aa)    
Predicted Functional Partners:
DvMF_0009
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein.
  
  
 0.904
DvMF_2058
KEGG: rec:RHECIAT_CH0003310 putative superfamily I DNA and RNA helicase protein.
  
    0.801
DvMF_1760
KEGG: zmo:ZMO0695 hypothetical protein.
  
    0.758
DvMF_0328
KEGG: dde:Dde_1214 hypothetical protein.
       0.425
DvMF_0330
PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing.
       0.414
DvMF_0331
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3535 histidine kinase.
       0.414
DvMF_0332
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator.
       0.414
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.