STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0336PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator. (191 aa)    
Predicted Functional Partners:
DvMF_2499
Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
  
   
 0.607
DvMF_2764
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.605
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
     0.542
DvMF_0158
KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.
  
     0.524
DvMF_0568
KEGG: dde:Dde_1660 DafA protein.
  
   
 0.510
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
   
 0.490
DvMF_2550
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase.
  
   
 0.485
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.476
DvMF_0305
KEGG: dde:Dde_3211 split soret cytochrome c precursor.
  
     0.455
DvMF_1886
PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
     0.455
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.