STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0343PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein. (366 aa)    
Predicted Functional Partners:
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
   
 
 0.785
DvMF_0342
KEGG: dde:Dde_1995 hypothetical protein.
 
     0.779
DvMF_2025
KEGG: dde:Dde_0121 hypothetical protein.
 
  
 0.775
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
 
     0.773
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.769
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
  
     0.768
DvMF_2891
KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like.
 
     0.766
DvMF_3089
KEGG: dde:Dde_2440 putative lipoprotein.
  
     0.765
DvMF_2361
TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like.
  
     0.761
DvMF_0851
PFAM: Sporulation domain protein; KEGG: lip:LI0230 hypothetical protein.
 
     0.757
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.