Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0356PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_1975 hypothetical protein. (402 aa)    
Predicted Functional Partners:
lpxC
UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
 
 
 0.848
DvMF_0357
PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein.
       0.815
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.760
DvMF_2369
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3645 TPR repeat-containing protein.
 
 
 0.741
DvMF_0902
Hypothetical protein.
  
     0.715
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.690
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
 
     0.687
DvMF_1552
KEGG: dde:Dde_0524 hypothetical protein.
  
     0.666
DvMF_0967
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein.
 
     0.636
DvMF_1756
KEGG: dde:Dde_3496 hypothetical protein.
 
     0.625
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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