Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0375PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative. (361 aa)    
Predicted Functional Partners:
DvMF_0376
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative.
 
0.999
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
 
 
 0.998
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.871
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
     
 0.860
DvMF_0852
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein.
   
 
 0.856
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
  
 
 0.855
DvMF_1044
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter, permease protein.
     
  0.842
DvMF_3137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0756 ABC transporter, ATP-binding protein.
     
  0.842
DvMF_0655
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lip:LI0076 sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
     
  0.841
DvMF_1043
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter, periplasmic-binding protein.
     
  0.841
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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