STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0387PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein. (259 aa)    
Predicted Functional Partners:
DvMF_0350
PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein.
  
     0.745
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.737
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.634
DvMF_0873
PFAM: nuclease (SNase domain protein); KEGG: dde:Dde_2354 nuclease (SNase-like).
  
     0.551
DvMF_2123
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dde:Dde_3474 chromosome replication initiation inhibitor protein.
  
   
 0.456
DvMF_0053
KEGG: hch:HCH_03353 hypothetical protein.
  
     0.418
DvMF_0388
KEGG: gsu:GSU1295 hypothetical protein.
  
     0.416
DvMF_2668
PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein.
  
   
 0.414
DvMF_1343
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease.
 
 
 0.400
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.