STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0388KEGG: gsu:GSU1295 hypothetical protein. (274 aa)    
Predicted Functional Partners:
DvMF_0350
PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein.
  
     0.637
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.583
DvMF_1101
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein.
  
     0.560
DvMF_3146
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423 putative polar amino acid transport system substrate-binding proetin.
  
     0.553
DvMF_1185
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.550
DvMF_0301
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein.
  
     0.539
DvMF_1405
KEGG: sat:SYN_01065 hypothetical protein.
  
     0.503
DvMF_2664
SMART: PDZ/DHR/GLGF domain protein; KEGG: mag:amb4535 Zn-dependent protease with chaperone function.
 
 
   0.491
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.483
DvMF_0389
Beta-lactamase; PFAM: penicillin-binding protein transpeptidase; KEGG: rfe:RF_1275 beta-lactamase class D.
       0.434
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.